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bprom program  (Softberry Inc)

 
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    Softberry Inc bprom program
    Bprom Program, supplied by Softberry Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/bprom program/product/Softberry Inc
    Average 86 stars, based on 1 article reviews
    bprom program - by Bioz Stars, 2026-05
    86/100 stars

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    Analysis <t>of</t> <t>Lalka27a</t> genes transcription during infection. At the top, the Lalka27a genome is schematically presented. Open reading frames are shown as arrows. Genes encoding proteins identified in Lalka27a virions are shown as hatched arrows. Promoters predicted by the <t>BPROM</t> tool are indicated with black filled flags. Promoters predicted through motif enrichment analysis are indicated with white flags. Asterisks indicate promoters supported by sRNA-Seq data. Predicted transcription terminators are indicated with black filled circles. Heatmaps indicating abundance of Lalka27a transcripts throughout the infection are shown below. ( A ) Transcript abundance for each gene normalized to the maximal abundance of this gene throughout the infection. ( B ) Transcript abundances normalized to the highest absolute abundance attained by a phage transcript (gene 55 at 40 min post-infection).
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    Analysis <t>of</t> <t>Lalka27a</t> genes transcription during infection. At the top, the Lalka27a genome is schematically presented. Open reading frames are shown as arrows. Genes encoding proteins identified in Lalka27a virions are shown as hatched arrows. Promoters predicted by the <t>BPROM</t> tool are indicated with black filled flags. Promoters predicted through motif enrichment analysis are indicated with white flags. Asterisks indicate promoters supported by sRNA-Seq data. Predicted transcription terminators are indicated with black filled circles. Heatmaps indicating abundance of Lalka27a transcripts throughout the infection are shown below. ( A ) Transcript abundance for each gene normalized to the maximal abundance of this gene throughout the infection. ( B ) Transcript abundances normalized to the highest absolute abundance attained by a phage transcript (gene 55 at 40 min post-infection).
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    Analysis <t>of</t> <t>Lalka27a</t> genes transcription during infection. At the top, the Lalka27a genome is schematically presented. Open reading frames are shown as arrows. Genes encoding proteins identified in Lalka27a virions are shown as hatched arrows. Promoters predicted by the <t>BPROM</t> tool are indicated with black filled flags. Promoters predicted through motif enrichment analysis are indicated with white flags. Asterisks indicate promoters supported by sRNA-Seq data. Predicted transcription terminators are indicated with black filled circles. Heatmaps indicating abundance of Lalka27a transcripts throughout the infection are shown below. ( A ) Transcript abundance for each gene normalized to the maximal abundance of this gene throughout the infection. ( B ) Transcript abundances normalized to the highest absolute abundance attained by a phage transcript (gene 55 at 40 min post-infection).
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    Analysis of Lalka27a genes transcription during infection. At the top, the Lalka27a genome is schematically presented. Open reading frames are shown as arrows. Genes encoding proteins identified in Lalka27a virions are shown as hatched arrows. Promoters predicted by the BPROM tool are indicated with black filled flags. Promoters predicted through motif enrichment analysis are indicated with white flags. Asterisks indicate promoters supported by sRNA-Seq data. Predicted transcription terminators are indicated with black filled circles. Heatmaps indicating abundance of Lalka27a transcripts throughout the infection are shown below. ( A ) Transcript abundance for each gene normalized to the maximal abundance of this gene throughout the infection. ( B ) Transcript abundances normalized to the highest absolute abundance attained by a phage transcript (gene 55 at 40 min post-infection).

    Journal: bioRxiv

    Article Title: A Unique Type V CRISPR-Cas System Encoded by a Group of Thermus Viruses

    doi: 10.64898/2026.04.20.719267

    Figure Lengend Snippet: Analysis of Lalka27a genes transcription during infection. At the top, the Lalka27a genome is schematically presented. Open reading frames are shown as arrows. Genes encoding proteins identified in Lalka27a virions are shown as hatched arrows. Promoters predicted by the BPROM tool are indicated with black filled flags. Promoters predicted through motif enrichment analysis are indicated with white flags. Asterisks indicate promoters supported by sRNA-Seq data. Predicted transcription terminators are indicated with black filled circles. Heatmaps indicating abundance of Lalka27a transcripts throughout the infection are shown below. ( A ) Transcript abundance for each gene normalized to the maximal abundance of this gene throughout the infection. ( B ) Transcript abundances normalized to the highest absolute abundance attained by a phage transcript (gene 55 at 40 min post-infection).

    Article Snippet: The promoters in T. thermophilus HB27c and Lalka27a genomic sequences were predicted using BPROM web server ( http://www.softberry.com/berry.phtml?topic=bprom&group=programs&subgroup=gfindb ).

    Techniques: Infection